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pco085166 protein (Zea mays) - STRING interaction network
"pco085166" - SMG9-like protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pco085166SMG9-like protein (423 aa)    
Predicted Functional Partners:
103654098
DUF2146 family protein (1088 aa)
       
 
  0.989
pco090939
Regulator of nonsense transcripts 1-like protein (395 aa)
     
 
  0.922
100304236
Regulator of nonsense transcripts 1-like protein (1273 aa)
     
 
  0.922
GRMZM2G076730_P01
annotation not available (889 aa)
     
 
  0.922
pco106378a
RNA-binding (RRM/RBD/RNP motifs) family protein; RNA-binding protein 8A; Uncharacterized protein (199 aa)
       
 
  0.861
100280761
RNA-binding protein 8A (198 aa)
       
 
  0.861
100283893
RNA-binding protein 8A (196 aa)
       
 
  0.861
GRMZM2G418263_P01
annotation not available (1807 aa)
       
 
  0.856
GRMZM2G349554_P01
Serine/threonine-protein kinase TOR (284 aa)
       
 
  0.856
GRMZM2G049342_P01
Serine/threonine-protein kinase TOR (1293 aa)
       
 
  0.856
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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