STRINGSTRING
PIN5b protein (Zea mays) - STRING interaction network
"PIN5b" - Putative truncated auxin efflux carrier PIN5b in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIN5bPutative truncated auxin efflux carrier PIN5b (264 aa)    
Predicted Functional Partners:
Zm.3321
Putative uncharacterized proteinVacuolar sorting receptor 1 ; (629 aa)
           
  0.461
umc1431
Hypothetical protein LOC100273187 (127 aa)
           
  0.461
AUX1
IAA20 - auxin-responsive Aux/IAA family member ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (197 aa)
           
  0.402
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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