STRINGSTRING
pco072542 protein (Zea mays) - STRING interaction network
"pco072542" - LOC100284727 in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pco072542LOC100284727 (334 aa)    
Predicted Functional Partners:
GRMZM2G021270_P01
Hypothetical protein LOC100193866 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
         
  0.695
phyB1
Hypothetical protein LOC100383702 ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1161 aa)
       
      0.648
phyB2
Hypothetical protein LOC100381811 ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1166 aa)
       
      0.648
phyA1
Hypothetical protein LOC100384268 (LOC100384268), mRNA; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1131 aa)
       
      0.635
GRMZM5G856297_P02
Hypothetical protein LOC100193383 (137 aa)
           
  0.622
GRMZM2G475536_P01
Hypothetical protein LOC100272638 (162 aa)
           
  0.622
GRMZM2G436295_P01
Uncharacterized protein (78 aa)
           
  0.622
umc2233
Hypothetical protein LOC100276732 (106 aa)
           
  0.622
Zm.28353
Uncharacterized protein (69 aa)
           
  0.622
GRMZM2G333183_P01
ABC transporter B family member 14-like (1240 aa)
           
  0.622
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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