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STRINGSTRING
mde1 protein (Zea mays) - STRING interaction network
"mde1" - Uncharacterized protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mde1Uncharacterized protein; ATFP3 (378 aa)    
Predicted Functional Partners:
ppr6
Pentatricopeptide repeat-containing protein (1039 aa)
           
  0.744
100382359
annotation not available (493 aa)
           
  0.681
100304350
Copper-transporting atpase paa1 (161 aa)
       
 
  0.673
IDP712
Copper chaperone for superoxide dismutase (308 aa)
     
 
  0.667
100383875
Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family (553 aa)
           
  0.548
100384013
WAT1-related protein (476 aa)
           
  0.548
103637420
annotation not available (171 aa)
           
  0.548
GRMZM2G069098_P01
Transparent testa 12 protein ; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family (522 aa)
           
  0.548
100273206
Early nodulin-like protein 9 (269 aa)
           
  0.548
GRMZM2G001296_P01
Maternal effect embryo arrest 18 (480 aa)
     
        0.531
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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