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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
farl3 protein (Zea mays) - STRING interaction network
"farl3" - annotation not available in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
farl3annotation not available (870 aa)    
Predicted Functional Partners:
GRMZM2G103897_P01
Cryptochrome 3 (578 aa)
           
  0.651
cl25415_1a
Uncharacterized protein (264 aa)
           
  0.516
cl24073_1
DBP transcription factor; Protein phosphatase 2C; Uncharacterized protein (405 aa)
           
  0.516
umc1160
Ribosomal large subunit pseudouridine synthase B (350 aa)
           
  0.510
GRMZM2G090156_P01
Methyltransferase (468 aa)
           
  0.506
GRMZM6G238741_P01
annotation not available (391 aa)
           
  0.456
100216988
annotation not available (1475 aa)
           
  0.400
rs55625046
Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1; Putative SNF2 domain-containing protein / helicase domain-containing protein (724 aa)
           
  0.400
GRMZM2G081429_P01
Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (551 aa)
           
  0.400
100502331
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle (888 aa)
           
  0.400
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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