• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
ubl1 protein (Zea mays) - STRING interaction network
"ubl1" - U6 snRNA phosphodiesterase in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubl1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (188 aa)    
Predicted Functional Partners:
GRMZM2G494600_P01
annotation not available (487 aa)
       
      0.849
100286002
Pre-mRNA-splicing factor prp45 (609 aa)
       
 
  0.833
100216777
Nucleic acid-binding/nucleotide-binding protein; Peptidyl-prolyl cis-trans isomerase E; Uncharacterized protein (165 aa)
       
      0.820
100275548
F-box family protein (283 aa)
       
      0.765
100216679
EMBRYO DEFECTIVE 140 (837 aa)
           
  0.765
AY106137
Protein pleiotropic regulatory locus 1 (478 aa)
       
      0.765
cl7007_1
GCIP-interacting family protein (353 aa)
       
      0.761
GRMZM2G102447_P02
Uncharacterized protein (367 aa)
       
      0.761
AC203535.4_FGP001
CDC5 protein (925 aa)
       
      0.759
103638373
G patch domain-containing protein TGH (989 aa)
       
      0.756
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
Server load: low (15%) [HD]