STRINGSTRING
Zm.139853 protein (Zea mays) - STRING interaction network
"Zm.139853" - Uncharacterized protein in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.139853Uncharacterized protein (496 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha (PEP)(EC 2.7.7.6)(Plastid-encoded RNA polymerase subunit alpha)(RNA polymerase subunit alpha); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (339 aa)
       
 
  0.671
clpP
ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)(Endopeptidase Clp); Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (216 aa)
       
 
  0.657
Zm.93229
ATP-dependent Clp protease proteolytic subunit (216 aa)
       
 
  0.657
ndhD
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 1.6.5.-)(NAD(P)H dehydrogenase, chain 4)(NADH-plastoquinone oxidoreductase chain 4) (515 aa)
           
  0.545
rpoB
DNA-directed RNA polymerase subunit beta (EC 2.7.7.6)(PEP)(Plastid-encoded RNA polymerase subunit beta)(RNA polymerase subunit beta); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1075 aa)
     
   
  0.541
Zm.21536
SURF1 (344 aa)
     
   
  0.497
GRMZM2G052457_P01
Uncharacterized protein (434 aa)
       
 
  0.467
GRMZM2G059981_P01
Hypothetical protein LOC100384526 (233 aa)
       
 
  0.464
GRMZM2G058563_P01
Annotation not available (804 aa)
           
  0.459
cox1
Cytochrome c oxidase subunit 1 (EC 1.9.3.1)(Cytochrome c oxidase polypeptide I); Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B (528 aa)
           
  0.457
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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