STRINGSTRING
Zm.158284 protein (Zea mays) - STRING interaction network
"Zm.158284" - Histone H1 in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.158284Histone H1 (368 aa)    
Predicted Functional Partners:
Zm.102753
Mre11B protein (719 aa)
           
  0.721
GRMZM2G355546_P01
Uncharacterized protein (979 aa)
           
  0.630
rbap1
Nucleosome/chromatin assembly factor C (1391 aa)
           
  0.628
LOX10
Lipoxygenase ; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding (905 aa)
           
  0.569
Zm.102086
Histone H2B ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (148 aa)
     
   
  0.507
GRMZM2G003306_P01
Histone H2A (156 aa)
     
        0.464
GRMZM2G095084_P02
Uncharacterized protein (623 aa)
           
  0.459
GRMZM2G073275_P01
Histone H4 (103 aa)
     
        0.452
trh1
Thioredoxin h homolog1 ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (148 aa)
           
  0.429
GRMZM2G143780_P01
Histone H4 (103 aa)
     
        0.420
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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