STRINGSTRING
Zm.1166 protein (Zea mays) - STRING interaction network
"Zm.1166" - RHC1A in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.1166RHC1A (292 aa)    
Predicted Functional Partners:
GRMZM2G406643_P01
Ubiquitin-like (141 aa)
     
  0.964
Zm.124974
UBiQuitin family member (143 aa)
     
  0.964
Zm.137692
Uncharacterized LOC103638077 (165 aa)
     
  0.831
UBC
Ubiquitin conjugating enzyme (148 aa)
     
  0.803
Zm.25284
Putative hect E3 ubiquitin ligase Fragment (1759 aa)
     
  0.793
Zm.26063
E3 ubiquitin-protein ligase UPL4 (1210 aa)
     
  0.793
GRMZM2G124297_P01
E3 ubiquitin-protein ligase UPL4-like (998 aa)
     
  0.793
Zm.84476
E3 ubiquitin-protein ligase UPL3-like (1877 aa)
     
  0.793
GRMZM5G866947_P03
Hypothetical protein LOC100192684 (148 aa)
       
  0.788
GRMZM5G862131_P01
Uncharacterized protein (153 aa)
       
  0.788
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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