STRINGSTRING
Zm.28180 protein (Zea mays) - STRING interaction network
"Zm.28180" - Twinkle homolog protein, chloroplastic/mitochondrial-like in Zea mays
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.28180Twinkle homolog protein, chloroplastic/mitochondrial-like (736 aa)    
Predicted Functional Partners:
Zm.50682
Hypothetical protein LOC100274706 (750 aa)
     
   
  0.570
GRMZM2G470438_P02
Hypothetical protein LOC100273582 ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (915 aa)
     
   
  0.567
GRMZM2G703583_P01
Annotation not available (480 aa)
     
   
  0.555
GRMZM2G411205_P01
Uncharacterized LOC103648453 (480 aa)
     
   
  0.546
GRMZM2G177582_P01
Annotation not available (480 aa)
     
   
  0.546
GRMZM2G168133_P01
Annotation not available (480 aa)
     
   
  0.546
GRMZM2G143961_P01
Annotation not available (480 aa)
     
   
  0.546
GRMZM2G108255_P01
Hypothetical protein LOC100274087 (678 aa)
     
   
  0.540
Zm.27098
Hypothetical protein LOC100275996 (LOC100275996), mRNA; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (310 aa)
     
   
  0.459
GRMZM2G451856_P02
Hypothetical protein LOC100382802 (368 aa)
     
   
  0.435
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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