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STRINGSTRING
GRMZM2G170388_P01 protein (Zea mays) - STRING interaction network
"GRMZM2G170388_P01" - Polygalacturonase in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GRMZM2G170388_P01Polygalacturonase (499 aa)    
Predicted Functional Partners:
GRMZM2G472060_P01
Pectate lyase 12 (483 aa)
         
  0.743
mmp16
Pectate lyase (466 aa)
         
  0.743
gpm506
Pectate lyase; Uncharacterized protein (453 aa)
         
  0.743
107275230
Pectate lyase homolog; Uncharacterized protein (438 aa)
         
  0.743
103636583
Pectate lyase (376 aa)
         
  0.743
GRMZM2G131912_P01
Pectate lyase (479 aa)
         
  0.743
GRMZM2G129635_P01
Pectate lyase (451 aa)
         
  0.743
GRMZM2G126077_P01
annotation not available (368 aa)
         
  0.743
542245
Pectate lyase-like protein (444 aa)
         
  0.743
pco073276b
Pectate lyase (366 aa)
         
  0.743
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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