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STRINGSTRING
cl40800_1c protein (Zea mays) - STRING interaction network
"cl40800_1c" - RanBP2-type zinc finger protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cl40800_1cRanBP2-type zinc finger protein (271 aa)    
Predicted Functional Partners:
AC203535.4_FGP001
CDC5 protein (925 aa)
     
 
  0.765
100273670
Transportin-1 (219 aa)
     
 
  0.758
100381988
Transportin-1 (891 aa)
     
 
  0.758
GRMZM2G312026_P01
Transportin-1 (508 aa)
     
 
  0.758
ORRM1
Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites (400 aa)
     
 
  0.724
GRMZM2G149230_P01
Transcription initiation factor TFIID subunit 12b (551 aa)
       
      0.673
103650984
annotation not available (487 aa)
       
      0.673
taf1
Transcription initiation factor TFIID subunit 12b (547 aa)
       
      0.673
GRMZM5G846048_P01
Uncharacterized protein (846 aa)
       
      0.652
GRMZM2G376959_P01
Uncharacterized protein (407 aa)
       
      0.652
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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