Groups of genes that are frequently observed in each other's genomic neighborhood.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Plasma membrane intrinsic protein1; Aquaporin PIP1-1 ; Belongs to the MIP/aquaporin (TC 1.A.8) family (288 aa)
Predicted Functional Partners:
Putative aquaporin NIP4-2; Aquaporin NIP1.1; Uncharacterized protein ; Belongs to the MIP/aquaporin (TC 1.A.8) family (299 aa)
Aquaporin NIP1-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes (282 aa)
annotation not available (518 aa)
Boron transporter-like protein 2 (670 aa)
30S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (136 aa)
Putative aquaporin NIP4-2; Belongs to the MIP/aquaporin (TC 1.A.8) family (317 aa)
Uncharacterized conserved protein UCP022280 (278 aa)
Uncharacterized conserved protein UCP022280 (214 aa)
ATPase, coupled to transmembrane movement of substance (618 aa)
Protein MOTHER of FT and TFL1 (190 aa)
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NCBI taxonomy Id: 4577 Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize