STRINGSTRING
Zm.13531 protein (Zea mays) - STRING interaction network
"Zm.13531" - Transposon protein in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.13531Transposon protein (184 aa)    
Predicted Functional Partners:
SECY
Preprotein translocase subunit secY, chloroplastic Precursor (CpSecY); The central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug (By similarity) (553 aa)
     
 
  0.845
Zm.118112
Inner membrane protein ALBINO3 (455 aa)
       
      0.653
pco148010
LOC100285911 (459 aa)
       
      0.653
GRMZM5G866861_P02
Preprotein translocase secY subunit (524 aa)
       
 
  0.635
GRMZM2G426200_P04
Hypothetical protein LOC100216602 (495 aa)
       
      0.542
GRMZM2G090020_P01
Uncharacterized protein (246 aa)
           
  0.457
GRMZM2G136854_P01
Inner membrane protein PPF-1, chloroplastic-like (215 aa)
       
      0.457
GRMZM2G064804_P02
Hypothetical protein LOC100382702 (423 aa)
       
      0.457
GRMZM2G055880_P01
Uncharacterized protein (276 aa)
       
      0.457
Zm.29828
Hypothetical protein LOC100277535 (150 aa)
     
   
  0.411
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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