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STRINGSTRING
100193778 protein (Zea mays) - STRING interaction network
"100193778" - 4-coumarate--CoA ligase-like 1 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
1001937784-coumarate--CoA ligase-like 1 (405 aa)    
Predicted Functional Partners:
cl31341_-1
SRP40 carboxy-terminal domain protein (540 aa)
       
 
  0.796
100277391
Protein CHROMATIN REMODELING 35 (1099 aa)
       
 
  0.796
103641317
Protein CHROMATIN REMODELING 35 (950 aa)
       
 
  0.796
mop1
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1127 aa)
           
  0.791
GRMZM2G098603_P01
RNA-directed DNA methylation 4 (318 aa)
           
  0.755
103633601
annotation not available (1179 aa)
       
 
  0.748
103651104
annotation not available (872 aa)
       
 
  0.740
103638395
Protein MICRORCHIDIA 6 (649 aa)
       
 
  0.740
103651618
annotation not available (677 aa)
       
 
  0.740
pco099889a
Protein MICRORCHIDIA 1 (590 aa)
       
 
  0.740
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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