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cl40355_1 protein (Zea mays) - STRING interaction network
"cl40355_1" - Shikimate biosynthesis protein aroDE in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cl40355_1Shikimate biosynthesis protein aroDE (509 aa)    
Predicted Functional Partners:
100191326
Shikimate kinase 1 chloroplastic (293 aa)
   
  0.988
GRMZM2G070218_P01
Shikimate kinase (305 aa)
   
  0.967
100283304
Shikimate kinase; Uncharacterized protein (303 aa)
   
  0.967
100272979
3-dehydroquinate synthase chloroplastic (440 aa)
     
 
  0.958
GRMZM2G051129_P02
3-dehydroquinate synthase chloroplastic (438 aa)
     
 
  0.958
sad1
Shikimate dehydrogenase; Uncharacterized protein (543 aa)
   
   
 
0.901
100272333
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic (532 aa)
         
 
0.900
pco087106a
Chorismate synthase (429 aa)
 
 
  0.792
tdsgR78H09
Chorismate synthase (440 aa)
 
 
  0.791
100501272
Phospho-2-dehydro-3-deoxyheptonate aldolase (537 aa)
   
   
  0.765
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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