STRINGSTRING
Zm.25055 protein (Zea mays) - STRING interaction network
"Zm.25055" - LOC100285657 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.25055LOC100285657 (350 aa)    
Predicted Functional Partners:
GRMZM2G151200_P01
Hypothetical protein LOC100272459 (419 aa)
 
  0.694
Zm.85119
Pseudouridylate synthase/ transporter (497 aa)
 
   
  0.675
GRMZM2G012143_P01
Hypothetical protein LOC100384615 (378 aa)
 
        0.631
GRMZM2G011888_P01
Hypothetical protein LOC100277365 (347 aa)
 
        0.630
Zm.24544
RNA pseudouridine synthase 6, chloroplastic (474 aa)
   
  0.612
GRMZM2G174669_P02
LOC100285018 (366 aa)
 
   
  0.604
GRMZM2G302233_P01
Hypothetical protein LOC100279896 (653 aa)
 
   
  0.603
GRMZM2G174149_P01
Hypothetical protein LOC100381582 (478 aa)
   
  0.602
GRMZM2G158261_P01
RNA binding protein (243 aa)
   
  0.602
GRMZM2G147335_P03
Hypothetical protein LOC100217137 ; Responsible for synthesis of pseudouridine from uracil (386 aa)
   
  0.602
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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