STRINGSTRING
sca1 protein (Zea mays) - STRING interaction network
"sca1" - Short chain alcohol dehydrogenase1 in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sca1Short chain alcohol dehydrogenase1 (283 aa)    
Predicted Functional Partners:
nced5
Viviparous-14 (573 aa)
         
  0.951
VP14
9-cis-epoxycarotenoid dioxygenase 1, chloroplastic Precursor (EC 1.13.11.51)(Protein VIVIPAROUS14)(VP-14); Has a 11,12(11’,12’) 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids. Not active on the all-trans isomers of violaxanthin and neoxanthin. Contributes probably to abscisic acid synthesis for the induction of seed dormancy (604 aa)
         
  0.951
Zm.30204
Viviparous-14 (LOC100281136), mRNA (430 aa)
         
  0.906
Zm.67057
Diacylglycerol kinase 3 (577 aa)
       
      0.901
pco106687
LOC100127508 (500 aa)
       
      0.901
GRMZM2G053977_P01
Hypothetical protein LOC100217183 (320 aa)
   
 
 
0.894
GRMZM2G468855_P02
Hypothetical protein LOC100273052 (307 aa)
   
 
 
0.894
Zm.80866
Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a (723 aa)
   
  0.821
Zm.20668
Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like (718 aa)
   
  0.821
ACC1
Acetyl-coenzyme A carboxylase (2325 aa)
   
 
  0.796
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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