STRINGSTRING
rph1 protein (Zea mays) - STRING interaction network
"rph1" - RNase PH homolog in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rph1RNase PH homolog (242 aa)    
Predicted Functional Partners:
GRMZM5G841900_P03
3-5 exoribonuclease CSL4 (199 aa)
     
  0.999
GRMZM2G009413_P01
Hypothetical protein LOC100216860 (319 aa)
 
  0.998
GRMZM2G091595_P01
Putative uncharacterized protein (287 aa)
 
  0.997
Zm.96156
Hypothetical protein LOC100280422 (LOC100280422), mRNA (287 aa)
 
  0.997
GRMZM2G040555_P01
Uncharacterized protein (121 aa)
 
  0.997
GRMZM2G123305_P01
Exosome complex exonuclease RRP43 (306 aa)
 
  0.997
GRMZM5G886044_P01
Hypothetical protein LOC100193137 (306 aa)
 
  0.997
cl22768_2
Hypothetical protein LOC100384304 (446 aa)
 
  0.996
IDP1614
Hypothetical protein LOC100193668 (448 aa)
 
  0.996
GRMZM2G005216_P01
Uncharacterized protein (280 aa)
 
  0.996
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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