Genes that are sometimes fused into single open reading frames.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Protein BABY BOOM 1 (679 aa)
Predicted Functional Partners:
DNA-directed RNA polymerases II IV and V subunit 3; DNA-directed RNA polymerase II 36 kDa polypeptide A; Uncharacterized protein (328 aa)
AP2-EREBP-transcription factor 160; Putative AP2/EREBP transcription factor superfamily protein isoform 1; Putative AP2/EREBP transcription factor superfamily protein isoform 2; Uncharacterized protein (363 aa)
Dehydration-responsive element-binding protein 2A; Dehydration responsive element binding protein 2 isoform b; Putative AP2/EREBP transcription factor superfamily protein isoform 1; Putative AP2/EREBP transcription factor superfamily protein isoform 2; Putative AP2/EREBP transcription factor superfamily protein isoform 3; Uncharacterized protein (367 aa)
Putative AP2/EREBP transcription factor superfamily protein (422 aa)
annotation not available (445 aa)
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (958 aa)
NAC domain-containing protein 21/22 (297 aa)
Homeobox-transcription factor 102; Homeobox-leucine zipper protein HAT7 (344 aa)
BEL1-like homeodomain protein 3 (651 aa)
Single myb histone 5; Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand; Belongs to the histone H1/H5 family. SMH subfamily (286 aa)
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NCBI taxonomy Id: 4577 Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize