STRINGSTRING
hyd5 protein (Zea mays) - STRING interaction network
"hyd5" - Beta-carotene hydroxylase in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hyd5Beta-carotene hydroxylase (293 aa)    
Predicted Functional Partners:
Zm.67287
Zeaxanthin epoxidase ; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin (669 aa)
     
   
  0.776
ggps2
Putative geranylgeranyl pyrophosphate synthase 2 (441 aa)
     
   
  0.726
Zm.88065
Putative geranylgeranyl pyrophosphate synthase 1 (367 aa)
     
   
  0.726
Zm.18811
Deoxy xylulose synthase 1 (719 aa)
           
  0.721
umc1506
Hypothetical protein LOC100216619 (426 aa)
           
  0.721
GRMZM2G179564_P01
Annotation not available (89 aa)
           
  0.569
PSY2
Phytoene synthase2 (402 aa)
     
   
  0.547
GRMZM2G053023_P01
Thioredoxin H-type 5 (133 aa)
           
  0.546
Zm.40861
Carotene epsilon-monooxygenase, chloroplastic (420 aa)
           
  0.536
CCD
White cap1 (550 aa)
           
  0.531
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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