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STRINGSTRING
100273800 protein (Zea mays) - STRING interaction network
"100273800" - RING/U-box superfamily protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
100273800RING/U-box superfamily protein (566 aa)    
Predicted Functional Partners:
GRMZM2G019738_P02
Arginine/serine-rich coiled coil protein 1 (345 aa)
           
  0.597
100381870
Putative SAP DNA-binding domain family protein isoform 1; Putative SAP DNA-binding domain family protein isoform 2 (732 aa)
           
  0.548
103635858
annotation not available (743 aa)
           
  0.548
GRMZM2G348909_P01
Protein IQ-DOMAIN 32 (890 aa)
           
  0.489
100272693
Protein IQ-DOMAIN 32 (901 aa)
           
  0.489
100286002
Pre-mRNA-splicing factor prp45 (609 aa)
           
  0.459
ARF27
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1053 aa)
           
  0.459
umc1115
Putative leucine-rich repeat transmembrane protein kinase family protein (632 aa)
       
 
  0.450
103646296
annotation not available (626 aa)
       
 
  0.450
pco067622
USP family protein (269 aa)
           
  0.448
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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