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STRINGSTRING
mmp16 protein (Zea mays) - STRING interaction network
"mmp16" - Pectate lyase in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmp16Pectate lyase (466 aa)    
Predicted Functional Partners:
103630641
Pectinesterase (410 aa)
 
   
  0.835
100381490
Pectinesterase (399 aa)
 
   
  0.835
GRMZM2G120779_P01
Pectinesterase (395 aa)
 
   
  0.834
100284984
Pectinesterase-1; Uncharacterized protein (324 aa)
 
   
  0.822
GRMZM2G070913_P02
Putative pectinesterase 11 (354 aa)
 
 
  0.820
100280285
Pectinesterase (563 aa)
 
 
  0.814
103633554
annotation not available (605 aa)
 
 
  0.810
GRMZM2G112984_P01
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (566 aa)
 
   
  0.807
GRMZM2G382557_P01
annotation not available (407 aa)
 
   
  0.806
GRMZM2G352359_P01
annotation not available (621 aa)
 
   
  0.806
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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