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RH3A protein (Zea mays) - STRING interaction network
"RH3A" - DEAD-box ATP-dependent RNA helicase 3A, chloroplastic in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RH3ADEAD-box ATP-dependent RNA helicase 3A, chloroplastic; Nuclear genome-encoded factor involved in ribosome biogenesis in chloroplasts. Binds specific group II introns in chloroplasts and facilitates their splicing. Required for normal development of chloroplasts; Belongs to the DEAD box helicase family. DDX21/DDX50 subfamily (745 aa)    
Predicted Functional Partners:
CRP1
Pentatricopeptide repeat-containing protein CRP1, chloroplastic; Required for the translation of the chloroplast petA and petD mRNAs. Required for the processing of the petD mRNA from a polycistronic precursor. Binds with high affinity to the 5’-UTR of the chloroplastic petA transcript. Activates psaC and petA translation by binding their 5’-UTRs; Belongs to the PPR family. P subfamily (668 aa)
     
 
  0.941
GRMZM2G044848_P01
Mediator of RNA polymerase II transcription subunit 36a (217 aa)
     
 
  0.939
GRMZM2G389240_P01
Uncharacterized protein (195 aa)
     
 
  0.938
GRMZM2G037778_P01
Uncharacterized protein (203 aa)
     
   
  0.916
AY104214
DEAD-box ATP-dependent RNA helicase 13 (842 aa)
   
 
0.906
pco138567b
30S ribosomal protein S1 (401 aa)
     
 
  0.904
pco063852
DEAD-box ATP-dependent RNA helicase 16 (634 aa)
   
 
0.901
GRMZM2G310465_P01
annotation not available (514 aa)
     
 
  0.895
103651490
annotation not available (601 aa)
   
 
0.891
pco076082
H/ACA ribonucleoprotein complex subunit 2; Uncharacterized protein (149 aa)
     
 
  0.887
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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