STRINGSTRING
nced5 protein (Zea mays) - STRING interaction network
"nced5" - Viviparous-14 in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nced5Viviparous-14 (573 aa)    
Predicted Functional Partners:
sca1
Short chain alcohol dehydrogenase1 (283 aa)
         
  0.951
VP14
9-cis-epoxycarotenoid dioxygenase 1, chloroplastic Precursor (EC 1.13.11.51)(Protein VIVIPAROUS14)(VP-14); Has a 11,12(11’,12’) 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids. Not active on the all-trans isomers of violaxanthin and neoxanthin. Contributes probably to abscisic acid synthesis for the induction of seed dormancy (604 aa)
   
   
0.805
Zm.30204
Viviparous-14 (LOC100281136), mRNA (430 aa)
   
   
0.802
GRMZM2G144273_P01
Putative uncharacterized protein (604 aa)
   
   
  0.628
Zm.67287
Zeaxanthin epoxidase ; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin (669 aa)
           
  0.622
cl30385_1
Hypothetical protein LOC100280318 (375 aa)
           
  0.559
TIDP2662
Hypothetical protein LOC100274367 (225 aa)
   
     
  0.532
csu815
Hypothetical protein LOC100191846 (522 aa)
           
  0.522
IDP1977
Hypothetical protein LOC100191697 (499 aa)
           
  0.478
Zm.22761
Uncharacterized protein (544 aa)
           
  0.478
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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