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cl47231_1a protein (Zea mays) - STRING interaction network
"cl47231_1a" - DEAD-box ATP-dependent RNA helicase 28 in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cl47231_1aDEAD-box ATP-dependent RNA helicase 28; Belongs to the DEAD box helicase family (786 aa)    
Predicted Functional Partners:
100273845
Nucleotide binding (452 aa)
   
 
  0.993
100192696
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (434 aa)
     
 
  0.993
103627696
annotation not available (1287 aa)
     
 
  0.988
GRMZM2G310465_P01
annotation not available (514 aa)
     
 
  0.988
107521945
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (391 aa)
     
 
  0.985
GRMZM2G056350_P01
MKI67 FHA domain-interacting nucleolar phosphoprotein-like; MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein; Uncharacterized protein (215 aa)
     
 
  0.983
GRMZM2G028672_P01
Uncharacterized protein (164 aa)
     
 
  0.983
GRMZM2G158676_P01
annotation not available (635 aa)
     
 
  0.983
GRMZM2G323838_P01
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations; Belongs to the pescadillo family (408 aa)
     
 
  0.982
pco136431
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (619 aa)
     
 
  0.982
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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