STRINGSTRING
cl40218_1 protein (Zea mays) - STRING interaction network
"cl40218_1" - PRKR interacting protein 1 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cl40218_1PRKR interacting protein 1 (177 aa)    
Predicted Functional Partners:
IDP2400
Inactive protein FRIGIDA (284 aa)
       
      0.871
TIDP3207
Zinc finger CCCH domain-containing protein 4 (493 aa)
     
 
  0.842
103649582
Small nuclear ribonucleoprotein E; Uncharacterized protein (177 aa)
     
      0.838
GRMZM2G014091_P01
Small nuclear ribonucleoprotein E (88 aa)
     
      0.838
100282336
Small nuclear ribonucleoprotein G; Uncharacterized protein (80 aa)
     
      0.828
100193784
Small nuclear ribonucleoprotein G; Uncharacterized protein (80 aa)
     
      0.828
GRMZM6G829919_P01
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (65 aa)
     
      0.827
100284147
Small nuclear ribonucleoprotein F; Uncharacterized protein (86 aa)
     
      0.815
pza03049
Small nuclear ribonucleoprotein F; Uncharacterized protein (107 aa)
     
      0.815
IDP144
Pre-mRNA-splicing factor cwc15 (230 aa)
     
      0.809
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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