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STRINGSTRING
rpd3 protein (Zea mays) - STRING interaction network
"rpd3" - Histone deacetylase in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpd3Histone deacetylase (700 aa)    
Predicted Functional Partners:
542087
Nucleosome/chromatin assembly factor group C; Uncharacterized protein (453 aa)
     
 
  0.888
GRMZM2G019863_P01
Flowering locus D (808 aa)
     
 
  0.887
hag101
GCN5 protein; Histone acetyl transferase; Histone acetyltransferase; Uncharacterized protein (515 aa)
       
 
  0.856
hda108
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (458 aa)
   
 
0.844
crd101
Chromdomain-containing protein CRD101; Uncharacterized protein (380 aa)
     
 
  0.809
GRMZM2G367886_P01
Histone deacetylase 19 (287 aa)
     
 
  0.804
nfc102
Nucleosome/chromatin assembly factor C; WD repeat-containing protein RBAP1 (1391 aa)
     
 
  0.792
mybr110
annotation not available (677 aa)
     
 
  0.792
GRMZM5G868120_P02
annotation not available (443 aa)
     
 
  0.765
LOC542103
Putative SET-domain containing family protein (1601 aa)
   
 
  0.763
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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