STRINGSTRING
rpd3 protein (Zea mays) - STRING interaction network
"rpd3" - Probable histone deacetylase 19 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpd3Probable histone deacetylase 19 (700 aa)    
Predicted Functional Partners:
GRMZM2G416552_P01
Annotation not available (802 aa)
   
  0.971
GCN5
Histone acetyl transferase GNAT/MYST 101 (515 aa)
     
  0.969
LOC542103
SET domain protein SDG117 (1601 aa)
   
  0.967
GRMZM2G125432_P01
Uncharacterized protein (1461 aa)
   
  0.967
mybr110
Uncharacterized protein (677 aa)
   
  0.958
GRMZM2G451254_P01
Histone H3 (136 aa)
     
  0.956
GRMZM2G171387_P01
Hypothetical protein LOC100192746 (136 aa)
     
  0.956
Zm.65649
Histone H3 (136 aa)
     
  0.956
GRMZM2G118355_P02
Hypothetical protein LOC100192746 (247 aa)
     
  0.956
GRMZM2G078314_P01
Histone H3 (136 aa)
     
  0.956
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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