STRINGSTRING
YAB8 protein (Zea mays) - STRING interaction network
"YAB8" - Putative uncharacterized protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YAB8Putative uncharacterized protein (223 aa)    
Predicted Functional Partners:
mwp1
Milkweed pod1 (477 aa)
           
  0.793
Zm.32947
Hypothetical protein LOC100272915 (268 aa)
           
  0.721
MUS1
DNA mismatch repair protein MSH2 (MUS1); Involved in postreplication mismatch repair. Binds specifically to DNA containing mismatched nucleotides thus providing a target for the excision repair processes characteristic of postreplication mismatch repair (By similarity) (942 aa)
           
  0.721
Baf1R-1
DNA-binding protein (351 aa)
           
  0.721
HB133
Rolled leaf1 (842 aa)
           
  0.664
baf1
Hypothetical protein LOC100304287 (341 aa)
           
  0.629
IG1
LOB domain-containing protein 6 (Protein ASYMMETRIC LEAVES 2)(Protein indeterminate gametophyte 1)(ZmIG1); Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes (260 aa)
           
  0.625
SGS3
Protein SUPPRESSOR OF GENE SILENCING 3 homolog (ZmSGS3)(Protein LEAFBLADELESS 1); Required for the biogenesis of miRNAs and trans-acting siRNAs and essential for the specification of adaxial/abaxial organ polarity. May be involved in natural virus resistance (By similarity) (594 aa)
           
  0.568
knox7
Homeobox protein knotted-1-like 7 Fragment (363 aa)
           
  0.566
KNOX4
Homeobox protein knotted-1-like 4 Fragment ; Probably binds to the DNA sequence 5’-TGAC-3’ (360 aa)
           
  0.549
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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