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STRINGSTRING
pco077498 protein (Zea mays) - STRING interaction network
"pco077498" - Uncharacterized protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pco077498Uncharacterized protein (103 aa)    
Predicted Functional Partners:
GRMZM2G310465_P01
annotation not available (514 aa)
     
 
  0.843
GRMZM2G314171_P01
annotation not available (464 aa)
 
 
  0.819
pco110965
Cleavage stimulation factor, 50 kDa subunit; Uncharacterized protein (424 aa)
   
 
  0.752
GRMZM2G057394_P02
ATP-dependent RNA helicase DDX23; Uncharacterized protein ; Belongs to the DEAD box helicase family (758 aa)
 
 
  0.736
100193784
Small nuclear ribonucleoprotein G; Uncharacterized protein (80 aa)
   
 
  0.725
100284147
Small nuclear ribonucleoprotein F; Uncharacterized protein (86 aa)
   
      0.699
pza03049
Small nuclear ribonucleoprotein F; Uncharacterized protein (107 aa)
   
      0.699
pco072546
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (559 aa)
   
 
  0.685
GRMZM2G413193_P01
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (421 aa)
     
 
  0.665
C3H42
C2H2 and C2HC zinc fingers superfamily protein (166 aa)
     
 
  0.665
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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