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STRINGSTRING
bpd1 protein (Zea mays) - STRING interaction network
"bpd1" - annotation not available in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bpd1annotation not available (195 aa)    
Predicted Functional Partners:
GRMZM2G316366_P01
annotation not available (127 aa)
           
  0.745
mads2
annotation not available (178 aa)
           
  0.730
GRMZM2G146142_P01
Putative ubiquitin-conjugating enzyme family (381 aa)
       
      0.691
BA1
Transcription factor bHLH83; Barren stalk1; Uncharacterized protein (219 aa)
           
  0.565
Ra1
Ramosa1 C2H2 zinc-finger transcription factor (175 aa)
           
  0.561
kn1
Homeotic protein knotted-1; Binds to RNA. Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5’- TGAC-3’ (359 aa)
           
  0.557
GRMZM6G557089_P01
annotation not available (136 aa)
     
 
  0.481
100282292
Putative cullin-like protein 2; Cullin-1 (249 aa)
     
 
  0.481
103627724
annotation not available (736 aa)
     
 
  0.481
103641392
Cullin-1; Belongs to the cullin family (744 aa)
     
 
  0.481
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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