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542081 protein (Zea mays) - STRING interaction network
"542081" - RNA polymerase sigma factor in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
542081RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released (568 aa)    
Predicted Functional Partners:
cl574_1
Hydroxymethylpyrimidine phosphate synthase1 (643 aa)
   
   
  0.983
100285356
ABC-type Co2+ transport system, permease component (214 aa)
   
        0.949
AC205376.4_FGP003
Chaperonin-like RbcX protein (169 aa)
     
        0.943
100284788
Thioredoxin-like 5 (189 aa)
   
        0.935
GRMZM2G023711_P01
annotation not available (188 aa)
   
        0.935
103648038
annotation not available (825 aa)
   
        0.927
RNC1
Ribonuclease III domain-containing protein RNC1, chloroplastic; Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on both subgroup IIA and subgroup IIB introns. The substrates of the subgroup II also require the CRM domain proteins CAF1 or CAF2. Binds both single-stranded and double-stranded RNA non-specifically, but lacks endonuclease activity. Required for plastid ribosome biogenesis (525 aa)
     
   
  0.896
100383277
annotation not available (609 aa)
     
        0.896
100279726
Adagio protein 3 (618 aa)
     
        0.896
rnp1
RNA binding protein 1 (267 aa)
   
        0.895
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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