STRINGSTRING
Zm.98042 protein (Zea mays) - STRING interaction network
"Zm.98042" - Retrotransposon protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.98042Retrotransposon protein (201 aa)    
Predicted Functional Partners:
Zm.90496
Uncharacterized protein (342 aa)
     
  0.979
GRMZM2G442057_P01
Uncharacterized protein (424 aa)
       
 
  0.948
GRMZM2G115255_P01
N-alpha-acetyltransferase 25, NatB auxiliary subunit (145 aa)
       
 
  0.948
Zm.85659
Putative uncharacterized protein (144 aa)
       
 
  0.948
GRMZM2G369373_P01
Annotation not available (264 aa)
     
 
  0.939
GRMZM2G323847_P01
Annotation not available (138 aa)
     
 
  0.939
GRMZM2G321276_P01
Annotation not available (238 aa)
     
 
  0.939
pco068905
Hypothetical protein LOC100274696 (908 aa)
     
 
  0.939
GRMZM2G426181_P02
Uncharacterized protein (305 aa)
     
 
  0.782
GRMZM2G079754_P01
Uncharacterized protein (613 aa)
     
 
  0.782
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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