node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Shal_0733 | cmk | Shal_0733 | Shal_2044 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_3180 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | 0.722 |
Shal_0733 | der | Shal_0733 | Shal_1371 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_3180 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.795 |
Shal_0941 | cmk | Shal_0941 | Shal_2044 | PFAM: pseudouridine synthase; KEGG: shw:Sputw3181_3146 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | 0.631 |
Shal_0941 | der | Shal_0941 | Shal_1371 | PFAM: pseudouridine synthase; KEGG: shw:Sputw3181_3146 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.753 |
Shal_2615 | cmk | Shal_2615 | Shal_2044 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_2246 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | 0.777 |
Shal_2615 | der | Shal_2615 | Shal_1371 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_2246 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.846 |
Shal_2615 | dnaG | Shal_2615 | Shal_1005 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_2246 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.641 |
Shal_2615 | ffh | Shal_2615 | Shal_1096 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_2246 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.419 |
Shal_3256 | cmk | Shal_3256 | Shal_2044 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_3383 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | 0.631 |
Shal_3256 | der | Shal_3256 | Shal_1371 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_3383 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.762 |
Shal_3596 | der | Shal_3596 | Shal_1371 | PFAM: conserved hypothetical protein; KEGG: slo:Shew_0592 hypothetical protein. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.841 |
Shal_3596 | dnaG | Shal_3596 | Shal_1005 | PFAM: conserved hypothetical protein; KEGG: slo:Shew_0592 hypothetical protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.491 |
cmk | Shal_0733 | Shal_2044 | Shal_0733 | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_3180 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.722 |
cmk | Shal_0941 | Shal_2044 | Shal_0941 | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | PFAM: pseudouridine synthase; KEGG: shw:Sputw3181_3146 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.631 |
cmk | Shal_2615 | Shal_2044 | Shal_2615 | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_2246 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.777 |
cmk | Shal_3256 | Shal_2044 | Shal_3256 | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_3383 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.631 |
cmk | der | Shal_2044 | Shal_1371 | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.985 |
cmk | ffh | Shal_2044 | Shal_1096 | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.813 |
cmk | gpsA | Shal_2044 | Shal_0046 | KEGG: slo:Shew_1953 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: slo:Shew_3803 glycerol-3-phosphate dehydrogenase (NAD(P)(+)). | 0.521 |
der | Shal_0733 | Shal_1371 | Shal_0733 | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_3180 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.795 |