STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shal_3190KEGG: slo:Shew_2885 2OG-Fe(II) oxygenase. (224 aa)    
Predicted Functional Partners:
Shal_3200
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.802
rlmG
rRNA (guanine-N(2)-)-methyltransferase; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
       0.605
Shal_3189
PFAM: BolA family protein; KEGG: slo:Shew_2883 BolA family protein; Belongs to the BolA/IbaG family.
  
    0.582
Shal_1542
methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
 
  
 0.537
Shal_1541
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; AlkA domain protein; SMART: HhH-GPD family protein; KEGG: shm:Shewmr7_1432 transcriptional regulator, AraC family.
  
  
 0.509
Shal_2480
KEGG: shn:Shewana3_1718 hypothetical protein.
  
     0.455
glnS
TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: spc:Sputcn32_1482 glutaminyl-tRNA synthetase.
 
      0.415
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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