STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmhAPhosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. (197 aa)    
Predicted Functional Partners:
Shal_2547
TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: slo:Shew_2357 D,D-heptose 1,7-bisphosphate phosphatase.
  
 0.994
hldE
rfaE bifunctional protein; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.
   
 0.966
hisB
KEGG: slo:Shew_2200 histidinol-phosphatase; TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: imidazoleglycerol-phosphate dehydratase; Polynucleotide kinase 3 phosphatase central region; In the N-terminal section; belongs to the histidinol- phosphatase family.
  
  
 0.899
Shal_4071
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: slo:Shew_0224 transport-associated.
  
    0.884
Shal_2293
PFAM: glycosyl transferase family 9; KEGG: wsu:WS1450 ADP-heptose-LPS heptosyltransferase II (RfaF).
 
   
 0.843
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
    
 
 0.794
Shal_4069
PFAM: protein of unknown function UPF0102; KEGG: sbm:Shew185_4070 protein of unknown function UPF0102; Belongs to the UPF0102 family.
  
  
 0.719
Shal_4211
PFAM: glycosyl transferase family 9; KEGG: slo:Shew_3702 glycosyl transferase, family 9.
 
   
 0.674
Shal_2332
PFAM: Chromosomal replication initiator DnaA; KEGG: sbm:Shew185_1779 chromosomal replication initiator DnaA; Belongs to the DnaA family.
   
 
 0.658
Shal_3795
CheC, inhibitor of MCP methylation; PFAM: response regulator receiver; KEGG: slo:Shew_0453 response regulator receiver protein.
    
 
 0.560
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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