AMSG_04656 protein (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMSG_04656

rRNA methylase. (253 aa)

Predicted Functional Partners:

AMSG_07512

0.812

AMSG_08554

0.777

AMSG_12333

0.776

AMSG_10349

0.757

AMSG_04688

0.751

AMSG_05245

0.735

AMSG_09236

0.692

AMSG_01527

0.640

AMSG_03013

0.633

AMSG_07514

0.633

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_01527	AMSG_03013	A0A0L0DRP1	A0A0L0D5K4	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	0.999
AMSG_01527	AMSG_04656	A0A0L0DRP1	A0A0L0D9Z3	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	rRNA methylase.	0.640
AMSG_01527	AMSG_04688	A0A0L0DRP1	A0A0L0DCA7	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	L51_S25_CI-B8 domain-containing protein.	0.997
AMSG_01527	AMSG_05245	A0A0L0DRP1	A0A0L0DAI7	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	PseudoU_synth_2 domain-containing protein.	0.715
AMSG_01527	AMSG_07512	A0A0L0DRP1	A0A0L0DJW8	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	Mitochondrial/chloroplast ribosomal protein L4/L29.	0.997
AMSG_01527	AMSG_07514	A0A0L0DRP1	A0A0L0DGZ1	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.966
AMSG_01527	AMSG_08554	A0A0L0DRP1	A0A0L0DKE8	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
AMSG_01527	AMSG_09236	A0A0L0DRP1	A0A0L0DP21	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	Pus7 protein.	0.882
AMSG_01527	AMSG_10349	A0A0L0DRP1	A0A0L0DPW9	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.966
AMSG_01527	AMSG_12333	A0A0L0DRP1	A0A0L0DRW1	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.999
AMSG_03013	AMSG_01527	A0A0L0D5K4	A0A0L0DRP1	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.999
AMSG_03013	AMSG_04656	A0A0L0D5K4	A0A0L0D9Z3	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	rRNA methylase.	0.633
AMSG_03013	AMSG_04688	A0A0L0D5K4	A0A0L0DCA7	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	L51_S25_CI-B8 domain-containing protein.	0.996
AMSG_03013	AMSG_05245	A0A0L0D5K4	A0A0L0DAI7	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	PseudoU_synth_2 domain-containing protein.	0.722
AMSG_03013	AMSG_07512	A0A0L0D5K4	A0A0L0DJW8	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	Mitochondrial/chloroplast ribosomal protein L4/L29.	0.997
AMSG_03013	AMSG_08554	A0A0L0D5K4	A0A0L0DKE8	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
AMSG_03013	AMSG_09236	A0A0L0D5K4	A0A0L0DP21	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	Pus7 protein.	0.879
AMSG_03013	AMSG_10349	A0A0L0D5K4	A0A0L0DPW9	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.968
AMSG_03013	AMSG_12333	A0A0L0D5K4	A0A0L0DRW1	50S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.999
AMSG_04656	AMSG_01527	A0A0L0D9Z3	A0A0L0DRP1	rRNA methylase.	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.640