STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_05423ERI1 exoribonuclease 3. (206 aa)    
Predicted Functional Partners:
AMSG_06853
SLBP_RNA_bind domain-containing protein.
   
 
 0.773
AMSG_11717
Uncharacterized protein.
   
 
 0.624
AMSG_03471
Exosome complex exonuclease 1.
    
 0.615
AMSG_11787
RNase_PH domain-containing protein.
    
 0.615
AMSG_06983
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
     
 0.562
AMSG_01285
60S ribosomal protein L30.
     
 0.562
AMSG_07625
50S ribosomal protein L19e.
    
  0.557
AMSG_05004
Ribos_L4_asso_C domain-containing protein.
    
 0.544
AMSG_05005
60S ribosomal protein L8.
   
 
  0.536
AMSG_00385
Testis-expressed sequence 10 protein.
   
 
  0.534
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.