AMSG_07761 protein (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMSG_07761

Coiled-coil domain-containing protein 111. (450 aa)

Predicted Functional Partners:

AMSG_01528

0.486

AMSG_04344

0.469

AMSG_11601

0.433

AMSG_02932

0.431

AMSG_06645

0.429

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_01528	AMSG_04344	A0A0L0DQW6	A0A0L0D6Z5	Uncharacterized protein.	SKA2 domain-containing protein.	0.945
AMSG_01528	AMSG_07761	A0A0L0DQW6	A0A0L0DHA7	Uncharacterized protein.	Coiled-coil domain-containing protein 111.	0.486
AMSG_02932	AMSG_06645	A0A0L0D2H1	A0A0L0DEV6	Swi3 domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	RING-type domain-containing protein.	0.406
AMSG_02932	AMSG_07761	A0A0L0D2H1	A0A0L0DHA7	Swi3 domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	Coiled-coil domain-containing protein 111.	0.431
AMSG_02932	AMSG_11601	A0A0L0D2H1	A0A0L0D8B3	Swi3 domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	Peptidylprolyl isomerase.	0.999
AMSG_04344	AMSG_01528	A0A0L0D6Z5	A0A0L0DQW6	SKA2 domain-containing protein.	Uncharacterized protein.	0.945
AMSG_04344	AMSG_07761	A0A0L0D6Z5	A0A0L0DHA7	SKA2 domain-containing protein.	Coiled-coil domain-containing protein 111.	0.469
AMSG_06645	AMSG_02932	A0A0L0DEV6	A0A0L0D2H1	RING-type domain-containing protein.	Swi3 domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.406
AMSG_06645	AMSG_07761	A0A0L0DEV6	A0A0L0DHA7	RING-type domain-containing protein.	Coiled-coil domain-containing protein 111.	0.429
AMSG_07761	AMSG_01528	A0A0L0DHA7	A0A0L0DQW6	Coiled-coil domain-containing protein 111.	Uncharacterized protein.	0.486
AMSG_07761	AMSG_02932	A0A0L0DHA7	A0A0L0D2H1	Coiled-coil domain-containing protein 111.	Swi3 domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.431
AMSG_07761	AMSG_04344	A0A0L0DHA7	A0A0L0D6Z5	Coiled-coil domain-containing protein 111.	SKA2 domain-containing protein.	0.469
AMSG_07761	AMSG_06645	A0A0L0DHA7	A0A0L0DEV6	Coiled-coil domain-containing protein 111.	RING-type domain-containing protein.	0.429
AMSG_07761	AMSG_11601	A0A0L0DHA7	A0A0L0D8B3	Coiled-coil domain-containing protein 111.	Peptidylprolyl isomerase.	0.433
AMSG_11601	AMSG_02932	A0A0L0D8B3	A0A0L0D2H1	Peptidylprolyl isomerase.	Swi3 domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.999
AMSG_11601	AMSG_07761	A0A0L0D8B3	A0A0L0DHA7	Peptidylprolyl isomerase.	Coiled-coil domain-containing protein 111.	0.433