STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_09863Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (145 aa)    
Predicted Functional Partners:
AMSG_00072
UBX domain-containing protein.
     
 0.986
AMSG_04072
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.820
AMSG_08328
RING-box protein 1A.
    
 0.791
AMSG_11828
Cullin domain-containing protein; Belongs to the cullin family.
    
 0.758
AMSG_04777
Cullin-2; Belongs to the cullin family.
    
 0.758
AMSG_01998
Cullin-3; Belongs to the cullin family.
    
 0.758
AMSG_00122
NEDD8 protein.
    
 0.729
AMSG_05411
Cullin 4; Belongs to the cullin family.
    
 0.680
AMSG_04139
Cullin-associated NEDD8-dissociated protein 2.
    
 0.598
AMSG_11293
TIP120 domain-containing protein.
    
 0.598
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.