STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK33873.1Type I restriction enzyme, R subunit. (1111 aa)    
Predicted Functional Partners:
SEK33920.1
Type I restriction enzyme M protein.
 
 
 0.999
SEK33894.1
Type I restriction enzyme, S subunit.
 
  
 0.995
SEK47000.1
Hypothetical protein.
  
    0.769
SEK33827.1
PHP domain-containing protein.
       0.735
SEK33805.1
Hypothetical protein.
       0.732
SEK33777.1
AAA domain (dynein-related subfamily).
  
  
 0.688
SEK33749.1
5-methylcytosine-specific restriction endonuclease McrBC, regulatory subunit McrC.
  
  
 0.682
SEK33960.1
DNA-binding transcriptional regulator, XRE family.
       0.621
SEK18620.1
Superfamily II DNA or RNA helicase.
  
  
 0.590
SEK33719.1
Hypothetical protein.
       0.578
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.