STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK55587.1AraC-type DNA-binding protein. (304 aa)    
Predicted Functional Partners:
SEK60212.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.852
SEL06791.1
Response regulator receiver domain-containing protein.
    
 0.828
SEK55625.1
Rhamnulose-1-phosphate aldolase.
 
     0.824
SEK55653.1
Rhamnulokinase.
 
   
 0.821
SEK59864.1
Flagellar motor switch protein FliM.
  
 0.816
SEK77507.1
AraC-type DNA-binding protein.
  
  
  0.799
SEK55616.1
L-arabinose isomerase.
 
  
  0.794
SEK40866.1
AraC-type DNA-binding protein.
 
  
  0.775
SEK99749.1
Two-component system, sensor histidine kinase YesM.
 
 
 0.665
SEK59892.1
Flagellar motor switch protein FliN/FliY.
  
 0.650
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.