STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO47232.1Multidrug resistance protein MdtN. (416 aa)    
Predicted Functional Partners:
CUO47201.1
Outer membrane channel protein.
 
   0.904
CUO95244.1
Uncharacterized protein conserved in bacteria.
 
 
 0.879
CUO96139.1
Acidobacterial duplicated orphan permease.
 
 
 0.879
CUO96178.1
Acidobacterial duplicated orphan permease.
 
   0.860
CUO96214.1
Uncharacterized protein conserved in bacteria.
 
   0.860
CUO96249.1
Macrolide transporter ATP-binding /permease protein.
 
   0.860
CUP71848.1
Macrolide transporter ATP-binding /permease protein.
 
   0.858
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
   0.857
macB_3
Macrolide export ATP-binding/permease protein MacB.
 
   0.857
dctB_1
C4-dicarboxylate transport sensor protein dctB.
 
     0.842
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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