STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN47382.1Hypothetical protein. (775 aa)    
Predicted Functional Partners:
AMN47868.1
Hypothetical protein.
  
  
 0.800
AMN47869.1
Hypothetical protein.
  
     0.761
AMN48379.1
Methyltransferase.
  
     0.668
AMN47904.1
Hypothetical protein.
  
     0.658
AMN47985.1
Hypothetical protein.
  
  
 0.632
AMN47406.1
TonB-dependent receptor.
  
   
 0.622
AMN48241.1
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.621
AMN48249.1
Peptidase M28.
  
     0.595
AMN46220.1
Hypothetical protein.
 
  
 0.551
AMN47787.1
Hypothetical protein.
 
  
 0.550
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.