STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN47891.1Hypothetical protein. (374 aa)    
Predicted Functional Partners:
AMN45570.1
Glutaconate CoA-transferase beta subunit.
 
     0.770
AMN45576.1
acyl-CoA dehydrogenase.
  
     0.743
AMN46205.1
Hypothetical protein.
  
    0.733
AMN45569.1
Glutaconate CoA-transferase alpha subunit.
  
     0.725
AMN45575.1
acyl-CoA dehydrogenase.
  
     0.704
AMN45581.1
Short-chain dehydrogenase/reductase.
  
     0.693
AMN45578.1
Short-chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.677
AMN47892.1
Short-chain dehydrogenase.
 
     0.667
AMN47539.1
Hypothetical protein.
  
     0.653
AMN45555.1
3-ketosteroid-delta1-dehydrogenase.
  
   
 0.633
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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