STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yecAConserved hypothetical protein YecA; silverDB:etchr00407; Belongs to the UPF0149 family. (185 aa)    
Predicted Functional Partners:
ygdR
Putative lipoprotein YgdR; silverDB:etchr01910.
  
     0.697
ygdI
Putative lipoprotein YgdI; silverDB:etchr01911.
  
     0.690
ypfN
Conserved hypothetical protein YpfN; silverDB:etchr01062.
  
     0.668
ETA_24780
Conserved hypothetical protein; silverDB:etchr02466.
  
     0.656
yfeC
Putative negative regulator; silverDB:etchr01099.
  
     0.638
ygaC
Putative cytoplasmic protein; silverDB:etchr00932.
  
     0.634
ompX
Virulence-related outer membrane protein X; silverDB:etchr02191.
  
     0.611
ydgD
Putative protease YdgD; silverDB:etchr01663; Belongs to the peptidase S1B family.
  
     0.583
rcsA
Colanic acid capsular biosynthesis activation protein A; Component of the Rcs signaling system, which controls transcription of numerous genes. Binds to DNA to regulate expression of genes.
  
     0.574
aaeB
P-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B); Forms an efflux pump with AaeA. Could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell; Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family.
  
     0.536
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.