Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
hrcC | hrcJ | ETA_05340 | ETA_05290 | HrcC protein (hrp cluster); silverDB:etchr00534. | HrcJ protein (hrp cluster); silverDB:etchr00529. | 0.979 |
hrcC | hrcR | ETA_05340 | ETA_05150 | HrcC protein (hrp cluster); silverDB:etchr00534. | HrcR protein (hrp cluster); silverDB:etchr00515. | 0.839 |
hrcC | hrcT | ETA_05340 | ETA_05130 | HrcC protein (hrp cluster); silverDB:etchr00534. | HrcT protein (hrp cluster); silverDB:etchr00513. | 0.904 |
hrcC | hrpF | ETA_05340 | ETA_05320 | HrcC protein (hrp cluster); silverDB:etchr00534. | HrpF protein (hrp cluster); silverDB:etchr00532. | 0.877 |
hrcC | hrpG | ETA_05340 | ETA_05330 | HrcC protein (hrp cluster); silverDB:etchr00534. | HrpG protein (hrp cluster); silverDB:etchr00533. | 0.877 |
hrcC | hrpI | ETA_05340 | ETA_05210 | HrcC protein (hrp cluster); silverDB:etchr00534. | Harpin secretion protein HrpI (hrp cluster); silverDB:etchr00521. | 0.841 |
hrcC | hrpT | ETA_05340 | ETA_05350 | HrcC protein (hrp cluster); silverDB:etchr00534. | HrpT protein (hrp cluster); silverDB:etchr00535. | 0.878 |
hrcC | hrpV | ETA_05340 | ETA_05360 | HrcC protein (hrp cluster); silverDB:etchr00534. | HrpV protein (hrp cluster); silverDB:etchr00536. | 0.877 |
hrcC | prgK | ETA_05340 | ETA_19130 | HrcC protein (hrp cluster); silverDB:etchr00534. | Type III secretion apparatus; silverDB:etchr01901. | 0.888 |
hrcC | spaQ | ETA_05340 | ETA_26860 | HrcC protein (hrp cluster); silverDB:etchr00534. | Type III secretion apparatus; silverDB:etchr02674. | 0.888 |
hrcJ | hrcC | ETA_05290 | ETA_05340 | HrcJ protein (hrp cluster); silverDB:etchr00529. | HrcC protein (hrp cluster); silverDB:etchr00534. | 0.979 |
hrcJ | hrcR | ETA_05290 | ETA_05150 | HrcJ protein (hrp cluster); silverDB:etchr00529. | HrcR protein (hrp cluster); silverDB:etchr00515. | 0.888 |
hrcJ | hrcT | ETA_05290 | ETA_05130 | HrcJ protein (hrp cluster); silverDB:etchr00529. | HrcT protein (hrp cluster); silverDB:etchr00513. | 0.920 |
hrcJ | hrpF | ETA_05290 | ETA_05320 | HrcJ protein (hrp cluster); silverDB:etchr00529. | HrpF protein (hrp cluster); silverDB:etchr00532. | 0.628 |
hrcJ | hrpG | ETA_05290 | ETA_05330 | HrcJ protein (hrp cluster); silverDB:etchr00529. | HrpG protein (hrp cluster); silverDB:etchr00533. | 0.628 |
hrcJ | hrpI | ETA_05290 | ETA_05210 | HrcJ protein (hrp cluster); silverDB:etchr00529. | Harpin secretion protein HrpI (hrp cluster); silverDB:etchr00521. | 0.934 |
hrcJ | hrpT | ETA_05290 | ETA_05350 | HrcJ protein (hrp cluster); silverDB:etchr00529. | HrpT protein (hrp cluster); silverDB:etchr00535. | 0.738 |
hrcJ | hrpV | ETA_05290 | ETA_05360 | HrcJ protein (hrp cluster); silverDB:etchr00529. | HrpV protein (hrp cluster); silverDB:etchr00536. | 0.626 |
hrcJ | spaQ | ETA_05290 | ETA_26860 | HrcJ protein (hrp cluster); silverDB:etchr00529. | Type III secretion apparatus; silverDB:etchr02674. | 0.922 |
hrcR | hrcC | ETA_05150 | ETA_05340 | HrcR protein (hrp cluster); silverDB:etchr00515. | HrcC protein (hrp cluster); silverDB:etchr00534. | 0.839 |
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