STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrcCHrcC protein (hrp cluster); silverDB:etchr00534. (676 aa)    
Predicted Functional Partners:
hrcJ
HrcJ protein (hrp cluster); silverDB:etchr00529.
 
 
 0.979
hrcT
HrcT protein (hrp cluster); silverDB:etchr00513.
 
 
 0.904
prgK
Type III secretion apparatus; silverDB:etchr01901.
 
 
 0.888
spaQ
Type III secretion apparatus; silverDB:etchr02674.
 
 
 0.888
hrpT
HrpT protein (hrp cluster); silverDB:etchr00535.
     
 0.878
hrpF
HrpF protein (hrp cluster); silverDB:etchr00532.
       0.877
hrpG
HrpG protein (hrp cluster); silverDB:etchr00533.
       0.877
hrpV
HrpV protein (hrp cluster); silverDB:etchr00536.
       0.877
hrpI
Harpin secretion protein HrpI (hrp cluster); silverDB:etchr00521.
 
 
 0.841
hrcR
HrcR protein (hrp cluster); silverDB:etchr00515.
 
 
 0.839
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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