STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB52564.1Hypothetical protein; KEGG: rho:RHOM_00125 2.7e-30 hypothetical protein; K03798 cell division protease FtsH; Psort location: CytoplasmicMembrane, score: 9.82. (137 aa)    
Predicted Functional Partners:
ftsH-3
Putative cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
     0.987
KXB52971.1
SPFH/Band 7/PHB domain protein; KEGG: reh:H16_A2036 4.1e-52 h16_A2036; membrane protease subunits, stomatin/prohibitin homologs.
   
 0.848
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.677
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.660
KXB60245.1
ATPase, AAA family; KEGG: bpb:bpr_III099 1.3e-80 hflB4; ATP-dependent metallopeptidase HflB4; Psort location: CytoplasmicMembrane, score: 7.88.
 
     0.660
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.644
KXB57647.1
Ribosomal protein S7; KEGG: apb:SAR116_2387 4.7e-44 30S ribosomal protein S7 K02992; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS7 family.
   
   0.637
rpmA
Ribosomal protein L27; KEGG: pfe:PSF113_5049 1.8e-19 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.636
rplQ
Ribosomal protein L17; KEGG: apb:SAR116_2416 9.9e-19 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.632
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
   0.630
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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