STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00024318Apple domain-containing protein. (270 aa)    
Predicted Functional Partners:
pdam_00000748
Cnd1 domain-containing protein.
   
 0.847
pdam_00004545
Uncharacterized protein.
   
 0.840
pdam_00006145
SMC hinge domain-containing protein.
   
 0.809
pdam_00012938
Structural maintenance of chromosomes protein.
   
 0.747
pdam_00014991
Uncharacterized protein.
   
 0.563
pdam_00023373
Structural maintenance of chromosomes protein.
   
 0.563
pdam_00005515
Structural maintenance of chromosomes protein.
   
 0.502
pdam_00018927
SMC_N domain-containing protein.
   
 0.501
pdam_00012481
Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes.
   
 
 0.489
pdam_00019037
UVR domain-containing protein.
   
  
 0.471
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
Server load: low (30%) [HD]