STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00007868Uncharacterized protein. (321 aa)    
Predicted Functional Partners:
pdam_00005771
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.715
pdam_00002529
Uncharacterized protein.
    
 0.713
pdam_00012365
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.687
pdam_00016763
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.671
pdam_00014799
Aspartate aminotransferase.
     
 0.634
pdam_00007258
Aspartate aminotransferase.
     
 0.634
pdam_00004003
Uncharacterized protein.
    
 0.633
pdam_00002809
Uncharacterized protein.
    
 0.633
pdam_00001946
Uncharacterized protein.
    
 0.610
pdam_00006528
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
     
 0.556
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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